AHPCRC Technical Areas

building wake flow blood cells cecropin and micelle
Air flow over building Blood cell microcirculation Antimicrobial peptide and micelle
protein structure metal dislocations perovskite
Protein helices and sidechains Dislocations in metal thin film Barium titanate ferroelectric


TA2: Computational Nanotechnologies and Biosciences
Lead: Eric Shaqfeh (Stanford)

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Many important changes happen on a tiny scale—the scale of molecules, viruses, and sub-microscopic particles. Computer simulation is ideally suited for setting up realistic scenarios and studying the interplay of many factors. High performance computing can be used to design strong, lightweight materials “from the atoms up” or to model biological systems at the molecular level. The speed and capacity of massively parallel computers are key to simulating real-world phenomena such as particle flows on scales ranging from nanometers to city neighborhoods and nanoseconds to hours.

 

Projects and People

2–1: Dispersion of Biological Warfare Agents (BWAs) in Attack Zones

Mark Jacobson (Stanford)
Gianluca Iaccarino (Stanford)
Eric Shaqfeh (Stanford)

2–2: Micro- and Nanofluidic Simulations for BWA Sensing and Blood Additive Development

Eric Shaqfeh (Stanford)
Eric Darve (Stanford)

2–3: Design of Antimicrobial Peptides for Nano-engineered Active Coatings

Eric Darve (Stanford)

2–4: Protein Structure Prediction for Virus Particles

Enrico Pontelli (NMSU)

2–5: Nanoscale Dislocation Dynamics in Crystals

Wei Cai (Stanford)

2–6: Multiscale Modeling of Materials

Eric Darve (Stanford)

2–7: Graphene Chemistry for Electronics Applications (new project)

Evan Reed (Stanford)

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